05/28/25

Examining Biosemiotics at the Juncture between Non-human and Human Agency (A Look Back and Forward) (Part 4 of 4)

0863 Now I want to step backwards then forwards.

The current examination looks at two books, described in point 0830 and 0831..

Here is how the examination starts.

These two examinations are available as e-books, by Razie Mah, under the title, Biosemiotics as Noumenon, Parts 1 and 2.  Part 1 is subtitled, “Semiotic Agency”.  Part 2 is subtitles, “Origins of Life”.

0864 Part 3 concerns nonhuman agency.  This examination is completed.

Part 4, concerning human agency, remains.

0865 The reading list for Part 4 starts with a discussion of Comments on John Deely’s Book (1994) “New Beginnings”, by Razie Mah.  The commentary is available at smashwords and other e-book venues.

There is cause for this.

0866 The STI noumenal overlay (Sharov and Tonnessen’s semiotic agency along with the interventional sign-relation) not only explains why phenomenology works, but it also recovers some philosophical riches of the much-derided scholastic era.  Modern histories of philosophy during the twentieth century often omit the period from the 500s to the 1400s, corresponding to the birth and development of universities throughout Christendom.  Some call the period, “the dark ages”.

It is sort of like the way modern social sciences pooh-pooh phenomenology.

Academic turf must be protected.  Who is more important, an expert in modern analytic philosophy or a so-called schoolman who can explicate Saint Thomas Aquinas?

0867 One of those treasures is uncovered by John Deely (1942-2017).  Deely is both a Thomist and a semiotician (in the tradition of Charles Peirce).  Deely figures out that Charles Peirce (in the 1800s) arrives at the same definition of the sign-relation as Baroque scholastic, John Poinsot (also John of St. Thomas, in the 1600s).

This discovery is discussed in New Beginnings.  But, it is not the only surprise.

0868 What is of interest to me, in this examination of biosemiotics, is the fact that the specifying and exemplar sign-relations are embedded in a three-level interscope composed of category-based nested forms, which I call, the scholastic interscope for how humans think.

The reason is obvious.  Semiotic agency2 is a reification of the specifying and exemplar sign-relations.

0869 So, the trajectory of this examination proceeds by way of the following script.

0870 So, this juncture between non-human agency and human agency ends and the examinations continue.

05/27/25

The Scholastic Interscope For How Humans Think (Part 1 of 4)

0871 The scholastic three-level interscope for how humans think is introduced in Comments on John Deely’s Book (1994) New Beginnings (by Razie Mah, available at smashwords and other e-book venues).

The conceptual apparatus is developed in A Primer on the Category-Based Nested Form and A Primer on Sensible and Social Construction.

The semiotic tool is productively used in Looking at John Deely’s Book (2010) “Semiotic Animal” (appearing in July 2024 in Razie Mah’s blog).

0872 Here is a diagram.

0873 The three-level interscope is a category-based nested form composed of category-based nested forms.

For each level, a triadic normal context3 brings a dyadic actuality2 into relation with a monadic possibility of ‘something’1.

Among levels, perspectivec brings situationb into relation with contenta.  Likewise, thirdness brings secondness into relation with firstness.

0874 Here is how each nested form is articulated.

On the content level, the normal context of what is happening3a brings the actuality of sensation2a into relation with the potential of ‘something happening’1a.

On the situation level, the normal context of what it means to me3b brings the actuality of perception2b into relation with the possibility of ‘situating content’1b.

On the perspective level, the normal context of whether this makes sense3c brings the actuality of a judgment2c into relation with the possibility of ‘contextualizing the situation’1c.

0874 Notice that the actualities are not portrayed as dyads.  When they are, the scholastic interscope becomes more… well… beautiful.  And, biosemioticians must be careful when a transcendental manifests, like a beautiful painting at the end of a hallway. There is no telling where that hallway leads.

0875 What about biosemiotics?

Elements of Sharov and Tonnessen’s noumenal overlay fit nicely into various slots in the scholastic interscope.

0876 Can I discern a specifying sign-relation?

Here, the initiating (semiotic)2a is a real event2a.

Information2b virtually situates the initiating semiotic2a, in the same way that a specifying sign-object (SOs) virtually situates its sign-vehicle (SVs).

Notice that both SOs and SVs belong to the realm of actuality.

0877 A specifying sign-interpretant (SIs) enables the SVs to stand for its SOs.

What is that SIs?

SIs consists of the situation-level normal context3b operating on its possibility1b.

In this instance, SIs is the normal context of self-governance3b operating on potential ‘courses of action’1b.

0878 I can go further.

I can imagine the exemplar sign-relation.

0879 A perspective-level goal2c virtually contextualizes situation-level information2b, in the same way that an exemplar sign-object (SOe) virtually contextualizes its sign-vehicle (SVe).

Both SOe and SVe belong to the realm of actuality.

0880 An exemplar sign-interpretant (SIe) enables the SVe to stand for its SOe.

What is that SIe?

This is where the scholastic interscope for how humans think comes in handy.

For semiotic agency, the SIe is vague.  The normal context of salience3c operates on a potential underlying salience1c.  I suppose the potential1c is ‘the possibility1c of contextualizing information2b‘, if that helps.

For the scholastic interscope, the normal context asking, “Does this make sense?”3c operates on the possibility of ‘contextualizing the situation’1c.

0881 To me, this implies that the term, “salience3c((1c))“, supports an actuality2c that weighs perception2b against sensation2a, while asking what goal2c might be attempted.

What does that imply?

0882 The scholastic interscope contains the specifying and exemplar sign relations, which figure so prominently in semiotic agency.

05/22/25

The Scholastic Interscope For How Humans Think (Part 4 of 4)

0895 So, I have a working definition of [meaning], as a judgment2c (SOs) unfolding into a category-based nested form2c (SVi).

Also, from point 0862, I have a working definition of [message], as the continuity between an expression of intention (SOi) and an initiating (semiotic) event (SVs).  Plus, the initiating (semiotic) event2a (SVs) is not the same as the event that occurs after judgment2c unfolds into an action2c (SVi).

0896 Here is a picture of the interventional sign, along with its contiguities.

0897 These contiguities turn out to be the connections between semiotic agency and the interventional sign-relation.

This is shown clearly in the biosemiotic (or STI) noumenal overlay.

In sum, the scholastic interscope for how humans think assists in appreciating the nature of the biosemiotic noumenal overlay.

The scholastic interscope contains three boundary-crossing sign relations.  Two belong to semiotic agency.  One belongs to the interventional sign-relation.

The scholastic interscope also contains three contiguities between sign-relations.  These correspond to content-level [message], situation-level [presence] and perspective-level [meaning].

0898 Finally, there is Peirce’s natural sign typology, consisting of icons, indexes and symbols.

An icon is a sign-relation, whose sign-object is based on the qualities of images, pictures, unities, monads and so forth.

An index is a sign-relation, whose sign-object is based on the characteristics of pointing, contact, cause and effect, and other dyads.

A symbol is a sign-relation, whose sign-object is based on the stuff of habit, convention, law, agreement, and so on.

0899 I conclude with a list of the sign-relations that are embedded in the scholastic interscope for how humans think,along with the sign-object and type of natural sign.

0900 This information should prove handy in the upcoming examination of human agency.

05/21/25

Looking at Alexei Sharov’s Chapter (2024) “Semiotics of Potential Meanings” (Part 1 of 8)

0901 The text before me is chapter seven of Pathways (see point 0831 for book details, pages 137-166).

Examinations of the chapters on non-human agency end up with a suggestion that biosemiotics may include more than semiotic agency.  Semiotic agency contains the specifying and exemplar sign-relations.  The scholastic interscope for how humans think contains one other sign-relation.  The interventional sign-relation is odd, compared to the other two sign-relations.

So is the author’s term, “potential meanings”.

0902 Of course, the terms, “interventional sign-relation” and “potential meanings” are mere labels.  They are tags.  They are spoken words.  They are unlike the manual-brachial word-gestures of fully linguistic hand or hand-speech talk.

For hand talk, in terms of parole, gesture-words picture and point to their referents.  They are icons and indexes.  So, word-gestures (SVs) abstract the natural sign-qualities of these types of signs.  Icons and indexes picture and point to ‘something that could be present’ (SOs).  Presence (SVe) can have many meanings, depending on what is going on.  Consequently, SOe is an intuitive abstraction based on what the word-gesture implicitly pictures and points to(langue).  I call the process, “implicit abstraction”.

For example, the hand-talk word, [image RAVEN], can denote the color black, as well as particular attitudes.

The hand-talk word, [POINT to corner of eye], can denote the color white, as well as particular attitudes and warnings.

0903 Can the term, “potential meaning” be stated using hand-talk?

No.  What is there to picture or point to?

The term is an explicit abstraction.

0904 In speech-alone talk, parole is arbitrarily related to langue.

Since parole comes first, as SVsthe specified referent (SOs) comes into being after a word is spoken.  After all, SVsassociates to message and message precedes presence (SOs).  The specified referent (SOs) associates to information2b.  But, since speech-talk cannot picture or point to anything, that information2b (SOs) may end up being explicitly defined.

0905 I say “may”, because sometimes information2b is obvious.  Consider the word, “chair”.  Everyone immediately intuits a “chair”, even though chairs do not occur in nature.  But, what about the American bureaucratic designation, “chair-person”? 

Sit down for a minute and think about it.

How can a person be a chair?

0906 Sharov’s technical term, “potential meaning” has two descriptors made into one character.  So, one way to approach the term is to step back and consider the initial claim made in Razie Mah’s e-book, How To Define The Word “Religion” (available at smashwords and other e-book venues).  The normal context of definition3 brings the actuality of a spoken term2 into relation with the potential of its meaning, presence and message’1.

0907 Surely, the reader anticipates my next move.

The words that go into the slot for potential1 are familiar.

Not only do they1 underlie the actuality of a spoken term2, they1 have already been used to label the three intra-level contiguities that occur in the biosemiotic noumenal overlay.

0908 Here is a picture.

Since [meaning] is the one contiguity that associates to “meaning”, [presence] and [message] must associate to the qualifier, “potential”

05/13/25

Looking at Alexei Sharov’s Chapter (2024) “Semiotics of Potential Meanings” (Part 8 of 8)

0975 In the closing, section 7.8, the author mentions a confounding word.

0976 What is that word?

Communication.

0978 Well, at least I can offer two other labels, “inter” and “infold”, which apply when the message comes externally or internally.

I don’t think that either “inter” or “infold” correspond to “communicate”.

And yet, they must.

0979 To this examiner, the conceptual apparatuses of potential meanings and potential signs entangle two features of the biosemiotic noumenal overlay, [presence] and [message].  “Potential meaning” dwells within [presence] and seems integral when an SOs “causes” an SVe.  “Potential sign” dwells within [message] and seems crucial to two types of contiguity between SOi and SVs, [inter] and [infold].

0980 By way of conclusion for this chapter, which harkens back to the beginnings of life on Earth, yet ends with humans in our current Lebenswelt, I would like to repeat the transformation that Sharov and Tonnessen perform(perhaps, unwittingly, but leading to great insight) in Semiotic Agency.  They transform the specifying and the exemplar sign relations into a dyad, suitable to overlay over the noumenon of what all living systems have in common.

0981 Specifically, they transform a fairly mature three-level interscope (comparable to the scholastic interscope for how humans think) into a dyad (matter2b [salience] form2c}) within a dyad (matter2c(2b( [self-governance3b: courses of action1b] form(2a))).

0982 Now, I review.

But, this will be more than a review.

I want to re-enact Sharov and Tonnessen’s construction of semiotic agency.

Plus, I want to add a reification of the interventional sign-relation, which completes the biosemiotic noumenal overlay.

0983 And most of all, I wish to perform this transformation and this re-enactment on the Deacon and Tabaczek interscope for emergence, appearing in Comments on Mariusz Tabaczek’s Arc of Inquiry (2019-2024) (by Razie Mah, available at smashwords and other e-book venues) and in the Razie Mah’s blogs for April through June, 2024.

0984 Here is a diagram of the three-level interscope for emergence.

0985 The element corresponding to the biosemiotic real initiating (semiotic) event is “the contained circulation of ingredients2a“.

For mitochondria, this is the separation of oxidative and reductive reactions involved in the combustion of glucose with oxygen.  On the oxidative side, glucose loses electrons to biomolecules capable of carrying them, generating a few ATP equivalents in the process.  On the reductive side, oxygen gains electrons from those electron-bearing biomolecules, generating lots of ATP equivalents in the process.

0986 The combustion of glucose with oxygen is disposed to move towards equilibrium3a and, when ignited1a, may do so with the release of lots of heat.

Mitochondria do not allow ignition.  Rather, they use the separation of the oxidative and reductive reactions1b in the normal context of utilizing the nonequilibrium dynamics (of what would be combustion)3b in order to generate emergent beings, ATP2b.  ATP2b then makes its way from mitochondria to various enzymatic sites in the eukaryotic cell.

ATP2b is a high-energy molecule and will decompose if left alone.  So, an enzyme3c that has the potential of using ATP2b “simplifies1c” the situation, by using the energy-released when ATP becomes ADP plus Pi (inorganic phosphate in solution) in order to perform a cellular actions2c, such as building a protein2c or transporting a molecule across a membrane2c.

0987 Back to the diagram.

The content-level category-based nested form for mitochondria “burning” glucose and oxygen follows.  The normal context of combustion3a brings the actuality of separated oxidation and reduction reactions2a into relation with the potential of ‘conducting these spontaneous reactions separately’1a.

For the situation level, the normal context of taking advantage of a nonequilibrium dynamic3b brings actual biosynthesis of ATP2b into relation with the agent’s ability to transfer free-energy from the oxidation of glucose and the reduction of oxygen to the emergent being1b.

For the perspective level, the normal contexts of enzymatic forms3c perform various biophysical operations2c based on the potential of coupling the energy-releasing degradation of ATP with an energy-requiring cellular operation1c.

0988 Here is the transformation to a dyad within a dyad coupled to an interventional sign-relation.

On the perspective level, the persistence of an eukaryotic cell2c [means] the power2c to accomplish various biochemical tasks.

For the interventional sign-relation, power2c (SVi) stands for a disposition2a (SOi) in regards to the normal context of chemical reactivities3a operating on the potential to displace chemicals to distinct compartments1a (SIi).

On the content level, the disposition2a to keep the reagents coming2a {(SOi) [message]} adds more new ingredients to the container2a (SVs).

0989 The actualities go with phenomena.  These are real elements.

The normal contexts and their respective potentials are what need to be explained.  These are the major contiguities between actualities on different levels.

A minor contiguity occurs within each level, [message] for content, [presence] for situation and [meaning] for perspective.

0990 These associations may be subject to revision.  That is the nature of exploration into the topic of “potential meanings”.

I thank the author for his well-referenced chapter and hope that this examination adds value to the text.

05/12/25

Looking at Alexander Kravchenko’s chapter (2024) “A Constructivist Approach…” (Part 1 of 6)

0991 The text before me is chapter eight of Pathways (see point 0831 for book details, pages 167-185).  The full title is “A Constructivist Approach to Meanings in the Universe”.  The author is a linguist at Baikal University, Irkutsk, Russia.

0992 My examination, so far, identifies a biosemiotic noumenal overlay, composed of both semiotic agency (the Sharov and Tonnessen noumenal overlay) and the interventional sign relation.  The diagram reifies three sign-relations: specifying, exemplar and interventional.  The specifying and exemplar sign-relations belong to semiotic agency.  The interventional sign relation stands outside of semiotic agency, but is integrated with semiotic agency by way of its participation in a three-level interscope.  A three-level interscope contains all three sign-relations.

0993 The following figure of an interscope contains the three sign-elements (SV for sign-vehicle; SO for sign-object; SI for sign-interpretant) for each sign-relation (subscripts “s” for specifying; “e” for exemplar; “i” for interventional).

0994 An interscope is a category-based nested form composed of category-based nested forms.

For each level, a triadic normal context3 brings a dyadic actuality2 into relation with a monadic potential1.

The dyadic actuality2 fits Peirce’s formula for the category of secondness.  Secondness consists of two contiguous real elements.  For clear notation, the contiguity is placed in brackets.

0995 In the above figure, the real elements are sign-vehicles and sign-objects.  The contiguity in each level carries the same label as one of the three potentials1 underlying any spoken term2 in the normal context of definition3.

Finally, among levels, perspectivec brings situationb into relation with the potential of contenta.

0996 Hmmm.  I have an interruption.

Now, what was I saying?

Uh-oh, I better start over.

0997 My examination, so far, isolates a biosemiotic noumenal overlay, composed of both semiotic agency (the Sharov and Tonnessen noumenal overlay) and the interventional sign relation.  The biosemiotic noumenal overlay reifies three sign-relations: specifying, exemplar and interventional.  The specifying and exemplar sign-relations belong to semiotic agency.  The interventional sign relation stands outside of semiotic agency, but is integrated with semiotic agency by way of two contiguities, [meaning] and [message].

0998 Here is a picture of the biosemiotic noumenal overlay.

0999 So far, so good.

The author of this chapter addresses the existence of meaning in the universe from an epistemological perspective.  “Episteme” derives from the Latin word for “knowledge”.  “Logos” comes from the Greek word for “word”.  Or maybe, “intrinsic nature of”?   How about “study of”?

Looking at the above figure, I see a problem.

For this examination, [meaning] is the contiguity between the exemplar sign-object (SOe) and the interventional sign-vehicle (SVi).

Is that the same as “the meaning” that exists in the universe?

1000 It makes me wonder, “What is a contiguity?”

Here are some cases.

1001 Aristotle’s hylomorphe is exemplar.  The much-abused word, “substance”, weirdly captures the way that matter “causes” form.  The verb, “substantiates”, is just as effective.  Can I justify the choice of the term, “substance”?  Well, what is one more technical definition among the many dictionary definitions for the word, “substance”?  Is that good enough?

One thing for sure, [substance] is not one of the real elements.  [It] is neither matter nor form.  [It] is the contiguity between them.  So, what is [substance]?

1002 We (humans) know [substance] because we know [cause], [effect], [contact], [influence] and many more contiguities between real elements.  This is precisely why contiguities cry out to be modeled.  The real elements support phenomena.  The contiguities cry out to be explained.

We (humans) also know actuality2.  Semiotic agency begins with a real initiating (semiotic) event (SVs) (that is, an encounter).  The first step in natural philosophy (for Aristotle’s tradition) is to regard a thing as matter [substance] form.  See Comments on Jacques Maritain’s Book (1935) Natural Philosophy (by Razie Mah, available at smashwords and other e-book venues).

Actuality2 belongs to the Peirce’s category of secondness.  Secondness consists of two contiguous real elements.  Secondness is dyadic.

1003 With this said, I can see why there is a problem with [meaning].  [Meaning] is a contiguity between two real elements.  One of those elements (SOe) belongs to semiotic agency.  The other element (SVi) belongs to the interventional sign-relation.

1004 Earlier, in points 0887 through 0894, I portray [meaning] as the contiguity between the triadic structure of an actionable judgment (such as SOe) and the triadic structure of its category-based nested form (such as SVi).

In this case, another word for [meaning] is [unfolds].

An actionable judgment [unfolds into] a category-based nested form.

This very curious insight is not explored further in this examination.

05/6/25

Looking at Alexander Kravchenko’s chapter (2024) “A Constructivist Approach…” (Part 6 of 6)

1049 Or, should I say?

SOi is what a disinterested observer would objectify if he were actually on the suprasubjective level, which he obviously claims to be.

So, where is the language game?

Is it in our brains or in our minds?

In section 8.4, the author raises a rather frightening option.

The agent3 may be the human nervous system3 rather than the human person3.

Does the potential of ‘final causality’1 implicate my brain1 or my mind1?

1050 Oh my, does my own brain3 bring forth the actuality of semiotic agency2 with the potential of ‘a final causality, where meaning and message bring forth my mind in an entanglement of the suprasubjective and the subjective (very similar to language and also very similar to the idea that both my Innerwelt and my Umwelt are Outerwelt to my nervous system)’1?

How about Daisy’s mind?

Or the duck’s?

1051 Here is a picture of the semiotic three-level interscope, with descriptive dyads for the perspective and content-level actualities displayed.

The colors indicate complementary pairs.

To me, these pairs look like human adaptations into the niche of triadic relations.  The human niche includes the potentials of interscopes and sign-relations.  The pairs link dyadic actualities on the perspective level and the content level of a three-level interscope.  These actualities contain contiguities that bridge the interventional sign-relation and semiotic agency.

1051 If [message] goes with “mind” and if [meaning] goes with the contiguity between two real elements, a goal2c and its expression as a real event2c, I may ask, “Are ‘meaning’ and ‘mind’ brought forth by a… gasp… brain?”

What about “language”?

Or, are mind and meaning organic to the reality that the three-level interscope also contains three sign-relations and the fact that the interventional sign-relation bridges to semiotic agency through the contiguities of [meaning] and [message]?

These are good questions.

1052 Sometimes, it is good to conclude an examination with a few of good questions.

My thanks to the author of this chapter, fully titled, “The Constructivist Approach to Meanings in the Universe”. 

04/30/25

Looking at Arthur Reber, Frantisek Baluska and William Miller Jr’s Chapter (2024) “The Sentient Cell” (Part 1 of 4)

0600 The text before me is chapter thirteen of Pathways (2024).  See point 0474 for book details.  The chapter title is “The Sentient Cell”.  The chapter is the first in Part III, titled “Meaning in Organism Behavior and Cognition”.  The chapter covers pages 281 to 298.

The authors of the chapter hale from diverse locations.  Arthur Reber works in the Department of Psychology at the University of British Columbia, Canada.  Frantisek Baluska is located at the Institute of Cellular and Molecular Botany, at the University of Bonn, Germany, and William Miller Jr. resides in the delocalized Bioverse Foundation.

0601 Delocalized?

Where else is one to locate bioversity?

0602 The abstract covers, in so many words, familiar territory (1 and 2).

First (1), semiotic agents3,1 are characterized by relationality, as well as thingness.  The category-based nested form serves to illustrate.

Semiotic agency is a dyadic “thing”.

The entire category-based nested form is a triadic “thing”.

0603 The category-based nested form includes all three of Peirce’s categories.  Each category expresses its own logic.  Category-based nested forms are fractal.  These lessons are garnered from two e-articles, A Primer on the Category-Based Nested Form and A Primer on Sensible and Social Construction, by Razie Mah, available at smashwords and other e-book venues.

0604 Second (2), agents3 and their potentials1 may be arranged hierarchically.  Lower-level subagents support the functionality of higher-level agency.  At the same time, higher-level agents call upon the operations of lower-level subagents.

Peirce has a technical term for the way thirdness contextualizes secondness and secondness situates firstness.  He calls it “precission”.

Some biologists offer a term for the way that higher-level agents appear to emerge from and situate lower-level agents.  They offer the word, “control”.  Unfortunately, “control” is already a technical term used in mechanical and electrical engineering.  I wonder whether these applications of the physical sciences are appropriate analogies for biosemiotics.

0605 So, I propose a word familiar to modern politics, and more appropriate to entities that are born, live and die.  The word starts like “precission”.  The word ends like “tide”.  And, the word conveys the impression of an agent1 calling subagents2 into a unified exercise of intentionity1.

The word is “presides”.

0606 A higher-level agent3 presides over subagents through the engagement of its semiotic agency2, arising from the potential of ‘something intentional’1.

Subagents are built into an agent’s semiotic agency2 and participate in its sign-interpretants of the specifying and exemplar sign-relations (SIs and SIe).

Here is a picture of semiotic agency and its sign-elements.

0607 The authors do not frame these now-familiar lessons (1 and 2) in terms of agent3((1) and semiotic agency2.

Instead, they marvel at the coterminality of life (cell) and awareness (sentience).

Why use the terms, “life” and “sentience”, as if they are separate concepts, the latter eventually qualifying the former?

Later in the article, the authors couple “sentience” and “consciousness” as if the latter is “what the cell would be if it were… um… subjectively experiencing the world like us (humans).”

0608 Of course, sentient cells are not “conscious” in the same way that humans are when awake (as opposed to asleep).

Clearly, the authors play a language game (typical for speech-alone talk in our current Lebenswelt).

0609 Sentience presides over life.  Life supports sentience.

To me, these key terms associate to the sign-interpretants of the specifying and exemplar sign-relations (SIs and SIe).

0610 Here is how that looks.

04/26/25

Looking at Arthur Reber, Frantisek Baluska and William Miller Jr’s Chapter (2024) “The Sentient Cell” (Part 4 of 4)

0636 If the agent3 defines2(3) what it is conscious of2(2) within the actuality of semiotic agency2, then what it is conscious of2(2) emerges from and situates the potential of meaning, presence and message2(1) as if it2(1) is a real manifestation of the potential of ‘final causality’1.

Now I can ask, “If the sentient cell3 could speak2(2), how would it label the actualities2 within it3?”

0637 Here are my guesses.

0638 Message goes with firstness and the real initiating (semiotic) event2a (SVs).  If there is no message, then why should I pay attention?

Presence goes with secondness and information2b (SOs, contiguous with SVe).  There is a certain ambiguity to information.  Sure, the real initiating event2a (SVs) stands for information2b (SOs) in regards to being alive3b((1b) (SIs).  But, information2b (SVe) also stands for a meaningful goal2c (SOe) in regards to my consciousness, if “consciousness” is the spoken word that applies3c((1c)).

Meaning goes with thirdness and a goal2c (SOe), which entails a judgment.  Do I (the agent3) act or not?

0639 Such a dramatic question.

As soon as I3 act, I express my intentions1. It is as if I3 act out my semiotic agency2 for gasp… all to witness, including those disinterested biologists.

Oh my, I feel exposed.

0640 At the end of the chapter (section 13.3), the authors raise the topic of subjective experience.

This topic concludes their discussion, in the same way that a dessert concludes a dinner.

But, I want to pass on that confection.

0641 Instead, let me review where this chapter has taken this examiner.

The authors offer a variation of Sharov and Tonnessen’s noumenal overlay that seems especially applicable to non-human agency.  Message, presence and meaning label phenomena.  Or, maybe they are conjectures that constitute observations and measurements of biological phenomena.  

Is the main reason that biosemioticians can draw upon these labels because the terms already exist in the lexicon of our civilization?

For example, Pavlov’s term, “anticipation”, turns out to be a productive guide for labeling a meaning, presence and message that biologists observe and measure.

Or, is something more significant going on?

0642 Here is a picture of semiotic agency and terminology discussed in this examination.

0643 Of course, technical words that apply to meaning, presence and message for the semiosis of a living creatureshould remain relevant.  Words that do not may be culled.

This speaks to a concern that is found in these examinations.  Biologists love to purloin common terms (such as “anticipation”) in order to construct their technical terminology (where “anticipation” codes for operant conditioning), leading to occasional confusion (as to whether “anticipation” is a conscious action or an unconscious process).

0644 Sharov and Tonnessen’s noumenal overlay characterizes semiotic agency2, as occurring in the normal context of an agent3 and arising from the potential of Aristotle’s final causality’1.  This serves as a very attractive corrective to the indiscretions of certain biologists who fall in love with their terminology (including, I am afraid to say, the authors of the present chapter).

0645 Yes, I admit that “the sentient cell” is a fabulous label for models that arise from biological observations of message, meaning and presence in semiotic agency.

But still, one must be careful not to occlude the semiotics within the S&T noumenal overlay.

0646 Here is a picture of the thing itself against the beautiful… outrageously evocative… terminology at play in this chapter.

0647 Yes, I, too, suffer the temptation of falling in love with spoken words.

This is one of the difficulties of our current Lebenswelt.

I thank the authors for their clever and rhetorical excursion into a topic that they obviously cherish.

04/25/25

Looking at Vic Norris and Alexei Sharov’s Chapter (2024) “…How Bacterial Cells… Change… in Response to Various Signals” (Part 1 of 4)

0648 The text before me is chapter fourteen in Pathways (see point 0474 for book details).  The chapter covers pages 299 to 324.  The authors are Vic Norris at the University of Rouen, France, and Alexei Sharov at Elixirgen Scientific in Baltimore, Maryland.

The full title is “Hypothesis about How Bacterial Cells Sustain and Change Their Lives in Response to Various Signals”.  The fullness of the title is significant.  Elements may be associated to the S&T noumenal overlay.

0650 Here are my associations.

The only term not in the association is “hypothesis”.

0651 Looking back to chapter 13, concerning the sentient cell, the model of the Cellular Basis of Consciousness (CBB), illuminates what the authors are constructing.  They project sentience from human consciousness onto the behavior of living bacteria.  Life and sentience are coterminous.

I suppose the authors’ hypothesis proposes that such a project is scientifically legitimate.

I already know the answer from the S&T noumenal overlay.  Semiotic agency2 is a reification of a three-level interscope, a purely relational structure which contains the specifying and exemplar sign relations.  This allows the designation of features that are crucial for empirio-schematic inquiry: phenomena and what needs to be modeled.

0652 Message, presence and meaning associate to phenomena.

The contiguities of [life] and [sentience] are what need to be modeled.

0653 Unfortunately, the authors do not have tools to visualize Peirce’s philosophy, which opens a window to two realms that cannot be observed and measured by humans: normal context3 and potential1.  Indeed, these two realms constitute the sign-interpretants of level-crossing sign-relations.  Which explains why [life] and [sentience] are precisely what models need to explain.

0654 So, how to the authors proceed?

The abstract and the first two sections (14.1 and 14.2) inform the reader as to the character of the project.

The proposed model for [self-governance3b operating on potential courses of action1b (SIs)] describes bacteria as hierarchically structured.  Functional roles are performed by hyperstructures, assemblies of molecules and macromolecules operating in multiple-level coordination as subagents. “Hyperstructures” are functionally competent states (coordinating as “temporal phenotypes”).

This model envisions subagents scrambling to support the ongoing hyperstructure or to change to a more appropriate hyperstructure.  The authors label this scramble, “competitive coherence”. 

The proposed model for [salience3c((1c)) (SIe)] is “plasticity”.  The resulting coordinated order among subagentsmaintains or changes cellular integrity… er… “identity”, as conditions either remain the same or alter.  Plasticity addresses the question, “What is the bacteria going to do?”  In effect, competitive coherence establishes a stage for a phenotypic expression of the holobiont.

0655 Does this argument flow into the structure of the S&T noumenal overlay?

Here are my associations.

0656 For the specifying sign-relation, various cues and signals2a (SVs) stand for competitive coherence2b (SOs) in regards to bacteria cells responding3b by potentially sustaining or changing their hyperstructure (or “temporal phenotype”)1b (SIs).

For the exemplar sign-relation, competitive coherence2b (SVe) stands for maintaining the cell’s identity2c (SOe) through plasticity3c((1c)) (SIe), where plasticity is the ability to hold or shift from one temporal phenotype to another.

0657 Now, an expert in bacteria should be able to observe and (in experiments) measure phenomena related to cues and signals2a (which the researcher can control), competitive coherence2b (patterns of behavior among bacterial subagents) and the maintenance or change of cell identity2c (observed as what actions the holobiont takes).

0658 These noumena may be objectified as phenomena that the researcher observes and measures.